2013
Li S and Breaker RR
(2013 Feb)
Eukaryotic TPP riboswitch regulation of alternative splicing involving long-distance base pairing
Nucleic Acids Research
41(3):
[Article link]
2012
Furukawa K, Gu H, Sudarsan N, Hayakawa Y, Hyodo M, Breaker RR
(2012 Jun)
Identification of Ligand Analogs that Control c-di-GMP Riboswitches
ACS Chem. Biol.
[Article link]
Pedrolli DB, Matern A, Wang J, Ester M, Siedler K, Breaker RR and Mack M
(2012 Jun)
A highly specialized flavin mononucleotide riboswitch responds differently to similar ligands and confers roseoflavin resistance to Streptomyces davawensis
Nucleic Acids Research
[Article link]
Wallace JG, Zhou Z and Breaker RR
(2012 May)
OLE RNA protects extremophilic bacteria from alcohol toxicity
Nucleic Acids Research
[Article link]
Li S, Breaker RR
(2012 Apr)
Fluoride enhances the activity of fungicides that destabilize cell membranes
Bioorganic & Medicinal Chemistry Letters
[Article link]
Gu H, Furukawa K, and Breaker RR
(2012 Apr)
Engineered Allosteric Ribozymes that Sense the Bacterial Second Messenger c-di-GMP
Analytical Chemistry
[Article link]
Breaker RR
(2012 Feb)
New Insight on the Response of Bacteria to Fluoride
Caries Research
46:
78-81
[Article link]
Baker JL, Sudarsan N, Weinberg Z, Roth A, Stockbridge RB, Breaker RR
(2012 Jan)
Widespread genetic switches and toxicity resistance proteins for fluoride.
Science
335(6065):
233-5
[Article link]
2011
Parker BJ, Moltke I, Roth A, Washietl S, Wen J, Kellis M, Breaker RR, Pedersen JS
(2011 Oct)
New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes
Genome Research
21(11):
1929-43
[Article link]
Breaker RR
(2011 Sep)
Prospects for Riboswitch Discovery and Analysis
Molecular Cell
43(6):
867-879
[Article link]
Chen AG, Sudarsan N, Breaker RR
(2011 Sep)
Mechanism for gene control by a natural allosteric group I ribozyme.
RNA
17(11):
1967-72
[Article link]
Perreault J, Weinberg Z, Roth A, Popescu O, Chartrand P, Ferbeyre G, Breaker RR
(2011 May)
Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations
PLoS Computation Biology
7(5):
[Article link]
Wallace JG and Breaker RR
(2011 Apr)
Improved genetic transformation methods for the model alkaliphile Bacillus halodurans C-125
Lett Appl Microbiol.
52(4):
430-2
[Article link]
McCown PJ, Roth A, Breaker RR.
(2011 Apr)
An expanded collection and refined consensus model of glmS ribozymes.
RNA
17(4):
728-36
[Article link]
Ames TD and Breaker RR
(2011 Jan)
Bacterial aptamers that selectively bind glutamine
RNA Biology
8, 1:
[Article link]
Meyer MM, Hammond MC, Salinas Y, Roth A, Sudarsan N and Breaker RR
(2011 Jan)
Challenges of ligand identification for riboswitch candidates
RNA Biology
8, 1:
[Article link]
Weinberg Z, Breaker RR
(2011 Jan)
R2R - software to speed the depiction of aesthetic consensus RNA secondary structures
BMC Bioinformatics
12:
[Article link]
Block KF, Puerta-Fernandez E, Wallace JG, Breaker RR.
(2011 Jan)
Association of OLE RNA with bacterial membranes via an RNA-protein interaction.
Mol Microbiol.
79(1):
21-34
[Article link]
2010
Breaker RR
(2010 Nov)
Riboswitches and the RNA World
Cold Spring Harb Perspect Biol.
[Article link]
Lee ER, Baker JL, Weinberg Z, Sudarsan N, Breaker RR
(2010 Aug)
An Allosteric Self-Splicing Ribozyme Triggered by a Bacterial Second Messenger
Science
329(5993):
845 - 848
[Article link]
Ames TD, Breaker RR
(2010 Aug)
Bacterial Riboswitch Discovery and Analysis
The Chemical Biology of Nucleic Acids
[Article link]
Ames TD, Rodionov DA, Weinberg Z, Breaker RR
(2010 Jul)
A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate.
Chem Biol.
17(7):
681-5
[Article link]
Block KF, Hammond MC, Breaker RR
(2010 May)
Evidence for Widespread Gene Control Function by the ydaO Riboswitch Candidate
J. Bacteriol.
[Article link]
Block KF, Wallace J, Puerta-Fernandez E and Breaker RR
(2010 Apr)
The large, noncoding OLE RNA is associated with membrane biochemistry
FASEB Journal
[Article link]
Weinberg Z, Wang JX, Bogue J, Yang J, Corbino K, Moy RH, Breaker RR
(2010 Mar)
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
Genome Biol.
11(3):
R31
[Article link]
Breaker RR
(2010 Mar)
RNA second messengers and riboswitches: Relics from the RNA world?
Microbe
5(1):
13-20
[Article link]
Breaker RR
(2010 Jan)
RNA switches out in the cold
Mol Cell.
37(1):
1-2
[Article link]